
These luscious lemon cream cheese muffins balance bright citrus flavors with a creamy, indulgent center for the perfect breakfast treat or afternoon snack. The tangy lemon glaze adds just the right amount of sweetness while enhancing the citrus punch that makes these muffins irresistible.
I developed this recipe during a summer when my lemon tree was overflowing with fruit. My neighbors now request these muffins whenever they help with yard work, and they've become our unofficial block party contribution.
- All purpose flour: Provides structure while keeping the crumb tender
- Granulated sugar: Balances the tartness of lemon without overwhelming it
- Baking powder and baking soda: Create the perfect rise and texture
- Unsalted butter: Adds richness and moisture
- Buttermilk: Creates tenderness and reacts with the leavening agents
- Fresh lemons: Absolutely essential for authentic flavor
- Cream cheese: Creates that luscious surprise center
- Vanilla extract: Enhances both the muffin and filling flavor profiles
- Powdered sugar: Dissolves perfectly in the glaze for smooth consistency
Step-by-Step Instructions
- Prepare Your Workspace:
- Preheat your oven to exactly 350°F and line your muffin tin with paper liners. Take the cream cheese out early to soften properly at room temperature for at least 30 minutes for the smoothest filling.
- Mix Dry Ingredients:
- Whisk the flour, sugar, baking powder, baking soda, and salt together in a large bowl until thoroughly combined. This even distribution ensures consistent leavening throughout each muffin.
- Combine Wet Ingredients:
- In a separate bowl, whisk together melted butter, buttermilk, eggs, vanilla, lemon zest, and lemon juice. The key here is to use freshly squeezed lemon juice for the brightest flavor and to incorporate the ingredients just until combined.
- Create The Batter:
- Pour the wet ingredients into the dry ingredients and fold together with a rubber spatula using gentle strokes. Mix only until no dry pockets remain about 10 to 12 folds. Overmixing will develop gluten and create tough muffins.
- Prepare Cream Cheese Filling:
- Beat the softened cream cheese, sugar, and vanilla extract until completely smooth and slightly fluffy. This usually takes about 2 minutes with an electric mixer. Ensure no lumps remain for the silkiest filling texture.
- Assemble The Muffins:
- Fill each liner halfway with batter, add a generous tablespoon of cream cheese filling directly in the center, then cover with remaining batter until each cup is about three quarters full. Use an ice cream scoop for consistent portions.
- Bake To Perfection:
- Bake in the preheated oven for 18 to 22 minutes. The muffins should be lightly golden at the edges and spring back when gently touched. A toothpick inserted into the cake portion should come out clean.
- Cool Properly:
- Allow the muffins to cool in the tin for exactly 5 minutes before transferring to a wire rack. This brief rest helps them set up enough to handle without breaking.
- Glaze The Muffins:
- Whisk powdered sugar, lemon juice, and zest until smooth. Once muffins are completely cool, drizzle the glaze over the tops. Allowing the muffins to cool fully prevents the glaze from melting off.

My favorite part of making these muffins is zesting the lemons. The intense citrus aroma immediately brightens my kitchen and mood. Last Christmas, I packaged these in small gift boxes for neighbors, and three of them asked for the recipe before New Year's.
Perfect Lemon Selection
The quality of your lemons makes a tremendous difference in this recipe. Look for bright yellow lemons that feel heavy for their size, indicating juiciness. Avoid lemons with hard spots or wrinkled skin. Meyer lemons work beautifully here when in season for a more floral, slightly sweeter flavor profile. Always zest your lemons before juicing them, and roll them firmly on the counter before cutting to release maximum juice.
Storage Solutions
These muffins maintain their quality for up to three days at room temperature in an airtight container. For longer storage, refrigerate for up to a week, though the texture will become slightly more dense. To freeze, wrap individual muffins tightly in plastic wrap, then place in a freezer bag for up to three months. Thaw overnight in the refrigerator, then bring to room temperature before serving. The glaze may become a bit absorbed during storage, so consider adding fresh glaze to refrigerated or frozen muffins.

Clever Variations
Try folding in fresh blueberries for lemon blueberry cream cheese muffins that showcase summer flavors. For a tropical twist, substitute lime for lemon and add shredded coconut to the batter. During fall months, orange zest and a pinch of cinnamon create a seasonal adaptation that pairs perfectly with warm beverages. The versatile cream cheese filling also works well with a tablespoon of fruit preserves mixed in for a fruit on the bottom effect. Allow the muffins to cool completely before storing to prevent condensation from making them soggy.
Frequently Asked Questions
- → How do you achieve the perfect texture for these lemon muffins?
The key to the perfect texture lies in carefully mixing the batter. Combine the wet and dry ingredients just until incorporated to avoid overmixing, which can result in dense muffins. Baking at the right temperature ensures a fluffy and moist crumb.
- → How do I prevent the cream cheese filling from sinking?
To ensure the cream cheese stays centered, layer the muffin batter carefully: fill the liner halfway, add a spoon of the cream cheese mixture, and then cover with more batter until it reaches 3/4 full.
- → Can I substitute buttermilk in this recipe?
If you don’t have buttermilk on hand, you can make a substitute by mixing 1 cup of milk with 1 tablespoon of lemon juice or white vinegar. Let it sit for 5-10 minutes before using.
- → How can I make the lemon flavor more intense?
For a stronger lemon flavor, you can increase the amount of lemon zest in the batter and glaze. Freshly squeezed lemon juice and high-quality lemons will also enhance the flavor.
- → How should I store these muffins?
Store the muffins in an airtight container in the refrigerator for up to 3 days. Allow them to come to room temperature before serving. You can also freeze the muffins (without glaze) for up to 2 months and glaze them after thawing.